Publications
#, First author; *, Corresponding author
51. Super Pangenome of Grapevines Empowers Improvement of the Oldest Domesticated Fruit
Li Guo#, *, Xiangfeng Wang#, Dilay Hazal Ayhan#, Mohammad Saidur Rhaman#, Ming Yan#, Jianfu Jiang, Dongyue Wang, Wei Zheng, Junjie Mei, Wei Ji, Jian Jiao, Shaoyin Chen, Jie Sun, Shu Yi, Dian Meng, Jing Wang, Mohammad Nasim Bhuiyan, Guochen Qin, Linling Guo, Qingxian Yang, Xuenan Zhang, Haisheng Sun, Chonghuai Liu, Wenxiu Ye*. Nature Genetics. DOI: 10.1038/s41588-025-02111-7, 2025
50. Layered stomatal immunity contributes to resistance of Vitis riparia against downy mildew Plasmopara viticola
Wei Ji#, Wei Zheng#, JunJie Mei, Xiaoyu Liu, Naomi Abe-Kanoh, Mohammad Saidur Rhaman, Guochen Qin, Wenxiu Ye*. bioRxiv, https://doi.org/10.1101/2025.02.23.639706v1, 2025
49. Malate inhibits light-induced stomatal opening through SLAC1-and G-proteins-mediated pathway in grapevine and Arabidopsis
Zhongyi Yang, Ruhai Gong, Yoshiharu Mimata, Shaosong Ye, Wei Ji, Wenxiu Ye. Bioscience, Biotechnology, and Biochemistry, 2025
48. TGG1 and TGG2 mutations impair allyl isothiocyanate-mediated stomatal closure in Arabidopsis thaliana
K. Oumaima, M. S. Hossain, Wenxiu Ye, E. Okuma, M. Issak, M. M. Islam, M. Uraji, Y. Nakamura, I. C. Mori, S. Munemasa, and Y. Murata. Protoplasma , 2025
47. 《葡萄酒庄规划建设与酿酒葡萄管理》
孙海生*, 叶文秀*. 机械工业出版社, 2024, ISBN: 978-7-111-75258-5
46. Non-invasive micro-test technology and applications
Kai Sun, Yunqi Liu, Yanshu Pan, Dongwei Di, Jianfang Li, Feiyun Xu, Li Li, Yoshiharu Mimata, Yingying Chen, Lixia Xie, Siqi Wang, Wenqian Qi, Yan Tang, Huachun Sheng, Bing Wang, Ruixue Sun. Dingquan Tan, Daohong Fu, Ye Yin, Ao Xue, Yichao Shi, Wenjing Shao, Lei Gong, Zhijian Jiang, Wei Zhang, Qiangsheng Wu, Yaosheng Wang, Minglin Lang, Wenxiu Ye, Weifeng Xu, Shuhe Wei, Weiming Shi, Yue Jeff Xu. Biophysics Reports, 10(X):1−16, 2024
45. A drought stress-responsive metabolite malate modulates stomatal responses through G-protein-dependent pathway
Yoshiharu Mimata, Ruhai Gong, Xuanxuan Pei, Guochen Qin, Wenxiu Ye. bioRxiv, https://doi.org/10.1101/2024.04.02.58783, 2024
44. Opportunities and Challenges in Advancing Plant Research with Single-cell Omics
Mohammad Saidur Rhaman#, Muhammad Ali#, Wenxiu Ye*, Bosheng Li*. Genomics, Proteomics & Bioinformatics, qzae026, 2024
43. Resveratrol and piceid enhance efferocytosis by increasing the secretion of MFG-E8 in human THP-1 macrophages
Jing Wang, Yuki Hashimoto, Miki Hiemori-Kondo, Akiko Nakamoto, Tohru Sakai, Wenxiu Ye, Naomi Abe-Kanoh. Bioscience, Biotechnology, and Biochemistry. DOI: 10.1093/bbb/zbae079, 2024
42. The engineered CRISPR‐Mb2Cas12a variant enables sensitive and fast nucleic acid‐based pathogens diagnostics in the field
Jian Jiao, Yiqi Liu, Mengli Yang, Jingcheng Zheng, Chonghuai Liu, Wenxiu Ye, Shangwei Song, Tuanhui Bai, Chunhui Song, Miaomiao Wang, Jiangli Shi, Ran Wan, Kunxi Zhang, Pengbo Hao, Jiancan Feng*, Xianbo Zheng*. Plant Biotechnology Journal 21 (7), 1465-1478, 2023
41. Identification and improvement of isothiocyanate-based inhibitors on stomatal opening to act as drought tolerance-conferring agrochemicals
Yusuke Aihara, Bumpei Maeda, Kanna Goto, Koji Takahashi, Mika Nomoto, Shigeo Toh, Wenxiu Ye, Yosuke Toda, Mami Uchida, Eri Asai, Yasuomi Tada, Kenichiro Itami, Ayato Sato, Kei Murakami, Toshinori Kinoshita. Nature communications 14 (1), 2665, 2023
40. Plant growth-promoting rhizobacteria-mediated adaptive responses of plants under salinity stress
Yusuke Aihara, Bumpei Maeda, Kanna Goto, Koji Takahashi, Mika Nomoto, Shigeo Toh, Wenxiu Ye, Yosuke Toda, Mami Uchida, Eri Asai, Yasuomi Tada, Kenichiro Itami, Ayato Sato, Kei Murakami*, Toshinori Kinoshita*. Journal of Plant Growth Regulation 42 (3), 1307-1326, 2023
39. pH as a signal and secondary messenger in plant cells
Raghavendra Agepati S, Wenxiu Ye, Kinoshita Toshinori. Frontiers in Plant Science 14, 1148689, 2023
38. Seed priming with nanoparticles: An emerging technique for improving plant growth, development, and abiotic stress tolerance
Rhaman Mohammad Saidur, Tania Shaila Shermin, Imran Shahin, Rauf Farjana, Kibria Mohammad Golam, Wenxiu Ye, Hasanuzzaman Mirza, Murata Yoshiyuki. Journal of Soil Science and Plant Nutrition 22 (4), 4047-4062, 2022
37. Editorial: Stomatal Biology and Beyond
Wenxiu Ye*, Juan Dong*, Toshinori Kinoshita* . Frontiers in Plant Science 13, 848811, 2022
36. Identification of Genes Preferentially Expressed in Stomatal Guard Cells of Arabidopsis thaliana and Involvement of the Aluminum-Activated Malate Transporter 6 vacuole malate channel in stomatal opening
Wenxiu Ye#, Shota Koya#, Yuki Hayashi, Huimin Jiang, Takaya Oishi, Kyohei Kato, Fukatsu Kohei, Toshinori Kinoshita*. Frontiers in Plant Science, 12:744991, 2021
35. Protease inhibitor-dependent inhibition of light-induced stomatal opening
Tao Wang, Wenxiu Ye, Ying Wang, Maoxing Zhang, Yusuke Aihara, Toshinori Kinoshita. Frontiers in Plant Science 12, 735328, 2021
34. 5-aminolevulinic acid-mediated plant adaptive responses to abiotic stress
Mohammad Saidur Rhaman, Shahin Imran, Md Masudul Karim, Jotirmoy Chakrobortty, Md Asif Mahamud, Prosenjit Sarker, Md Tahjib-Ul-Arif, Arif Hasan Khan Robin, Wenxiu Ye, Yoshiyuki Murata, Mirza Hasanuzzaman. Plant Cell Reports 40, 1451-1469, 2021
33. Arabidopsis downy mildew effector HaRxLL470 suppresses plant immunity by attenuating the DNA‐binding activity of bZIP transcription factor HY5
Shuyun Chen, Tao Ma, Shiren Song, Xinlong Li, Peining Fu, Wei Wu, Jiaqi Liu, Yu Gao, Wenxiu Ye, Ian B. Dry, Jiang Lu. New Phytologist 230 (4), 1562-1577, 2021
32. The comprehensive leaf cell wall analysis using carbohydrate microarray reveals the polysaccharide-level variations between Vitis species with different resistance to downy mildew
Yu Gao, Xiao Yin, Hua Jiang , John Hansen , Bjørn Jørgensen , James Moore , Peng Fu , Wei Wu , Bing Yang , Wenxiu Ye, Song Song, Jang Lu. Polymers 13 (9), 1379, 2021
31. Plasma membrane H+-ATPase overexpression increases rice yield via simultaneous enhancement of nutrient uptake and photosynthesis
Maoming Zhang, Yin Wang, Xi Chen, Feiyun Xu, Ming Ding, Wenxiu Ye, Yuya Kawai, Yosuke Toda, Yuki Hayashi, Takamasa Suzuki, Houqing Zeng, Liang Xiao, Xin Xiao, Jin Xu, Shiwei Guo, Feng Yan, Qirong Shen, Guohua Xu, Toshinori Kinoshita* and Yiyong Zhu. Nature Communications 12 (1), 735, 2021
30. Plasmopara viticola effector PvRXLR111 stabilizes VvWRKY40 to promote virulence
Tao Ma, Shuyun Chen, Jiaqi Liu, Peining Fu, Wei Fu, Shiren Song, Yu Gao, Wenxiu Ye, Jiang Lu. Molecular Plant Pathology 22 (2), 231-242, 2021
29. Plasmopara viticola effector PvRXLR53 suppresses innate immunity in Nicotiana benthamiana
Jiaqi Liu, Sheng Chen, Tao Ma, Ying Gao, Sheng Song, Wenxiu Ye, Jiang Lu. Plant signaling & behavior 16 (2), 1846927, 2021
28. Reactive carbonyl species mediate methyl jasmonate-induced stomatal closure
Md. Moshiul Islam, Wenxiu Ye, Farhana Aktera, Mohammad Saidur Rhaman, Daisuke Matsushima, Shingo Munemasa, Eiji Okuma, Yoshimasa Nakamura, Md. Sanaullah Biswas, Jun’ichi Mano, Yoshiyuki Murata. Plant and Cell Physiology 61 (10), 1788-1797, 2020
27. Stomatal immunity against fungal invasion comprises not only chitin-induced stomatal closure but also chitosan-induced guard cell death
Wenxiu Ye#*, Shintaro Munemasa, Tomonori Shinya, Wei Wu, Tao Ma, Jiang Lu, Toshinori Kinoshita, Hanae Kaku, Naoto Shibuya, Yoshiyuki Murata*. Proceedings of the national academy of sciences 117 (34), 20932-20942, 2020
26. Inhibition of light-induced stomatal opening by allyl isothiocyanate does not require guard cell cytosolic Ca2+ signaling
Wenxiu Ye#, Eigo Ando, Mohammad Saidur Rhaman, Md Tahjib-Ul-Arif, Eiji Okuma, Yoshimasa Nakamura, Toshinori Kinoshita, Yoshiyuki Murata*. Journal of experimental botany 71 (10), 2922-2932, 2020
25. 葡萄与葡萄酒中细胞壁的研究进展
高宇, 袁华璐, 缪榕, 薛飞, 宋士任, 叶文秀, 卢江*. 中外葡萄与葡萄酒, 6:54-59, 2020
24. Plasmopara viticola effector PvRXLR159 suppresses immune responses in Nicotiana benthamiana
Xuejiao Lei, Xue Lan, Wenxiu Ye, Ying Liu, Sheng Song, Jiang Lu. Plant signaling & behavior 14 (12), 1682220, 2019
23. Reactive Carbonyl Species Function as Signal Mediators Downstream of H2O2 Production and Regulate [Ca2+]cyt Elevation in ABA Signal Pathway in Arabidopsis guard cells
Md. Moshiul Islam, Wenxiu Ye, Daisuke Matsushima, Mohammad Saidur Rhaman, Shingo Munemasa, Eiji Okuma, Yoshimasa Nakamura, Sanaullah Biswas, Junichi Mano, Yoshiyuki Murata. Plant and Cell Physiology 60 (5), 1146-1159, 2019
22. MPK9 and MPK12 function in SA-induced stomatal closure in Arabidopsis thalian
Md Atiqur Rahman Khokon, Mohammad Abdus Salam, Fabien Jammes, Wenxiu Ye, Mohammad Anowar Hossain, Eiji Okuma, Yoshimasa Nakamura, Izumi C Mori, June M Kwak, Yoshiyuki Murata. Bioscience, biotechnology, and biochemistry 81 (7), 1394-1400, 2017
21. Reactive carbonyl species mediate ABA signaling in guard cells
MM Islam, W Ye, D Matsushima, S Munemasa, E Okuma, Y Nakamura, ... Plant and Cell Physiology 57 (12), 2552-2563, 2016
20. Microbe associated molecular pattern signaling in guard cells
Wenxiu Ye, Yoshiyuki Murata. Frontiers in plant science 7, 583, 2016
19. Allyl isothiocyanate induces stomatal closure in Vicia faba
Mohammad Abdul Sobahan, Nusrat Akter, Eiji Okuma, Misugi Uraji, Wenxiu Ye, Izumi C. Mori, Yoshimasa Nakamura, Yoshiyuki Murata. Bioscience, Biotechnology, and Biochemistry 79 (10), 1737-1742, 2015
18. Microbe-associated molecular pattern signaling in Arabidopsis guard cells
Wenxiu Ye, 2015
17. Two guard cell mitogen‐activated protein kinases, MPK9 and MPK12, function in methyl jasmonate‐induced stomatal closure in Arabidopsis thaliana
Mohammad Abdul Razzaque Khokon, Mohammad Arif Salam, Fabrice Jammes, Wenxiu Ye, Mohammad Anowar Hossain, Misugi Uraji, Yoshimasa Nakamura, Izumi C. Mori, Jin-Myung Kwak, Yoshiyuki Murata. Plant Biology 17 (5), 946-952, 2015
16. Inhibition by acrolein of light-induced stomatal opening through inhibition of inward-rectifying potassium channels in Arabidopsis thaliana
Md Moshiul Islam, Wenxiu Ye, Daisuke Matsushima, Mohammad Abdul Khokon, Shingo Munemasa, Yoshimasa Nakamura, Yoshiyuki Murata. Bioscience, Biotechnology, and Biochemistry 79 (1), 59-62, 2015
15. 病原菌によるシロイヌナズナの気孔閉口機構
叶文秀, 村田芳行*. バイオサイエンスとインダストリー, 73: 33-36
14. Cyclic adenosine 5′‐diphosphoribose (cADPR) cyclic guanosine 3′,5′‐monophosphate positively function in Ca2+ elevation in methyl jasmonate‐induced stomatal closure, cADPR is required for methyl jasmonate-induced ROS accumulation NO production in guard cells
Mohammad Anowar Hossain, Wenxiu Ye, Shingo Munemasa, Yoshimasa Nakamura, Izumi C. Mori, Yoshiyuki Murata. Plant Biology 16 (6), 1140-1144, 2014
13. Difference in abscisic acid perception mechanisms between closure induction and opening inhibition of stomata
Ye Yin, Yuji Adachi, Wenxiu Ye, Maki Hayashi, Yoshimasa Nakamura, Toshinori Kinoshita, Izumi C. Mori*, Yoshiyuki Murata. Plant physiology 163 (2), 600-610, 2013
12. Calcium-dependent protein kinase CPK6 positively functions in induction by yeast elicitor of stomatal closure and inhibition by yeast elicitor of light-induced stomatal opening in Arabidopsis
Wenxiu Ye, Daichi Muroyama, Shintaro Munemasa, Yoshimasa Nakamura, Izumi C. Mori, Yoshiyuki Murata*. Plant Physiology 163 (2), 591-599, 2013
11. Endogenous abscisic acid is involved in methyl jasmonate-induced reactive oxygen species and nitric oxide production but not in cytosolic alkalization in Arabidopsis guard cells
Wenxiu Ye, Mohammad Arif Hossain, Misugi Uraji, Yoshimasa Nakamura, Izumi C. Mori, Yoshiyuki Murata. Journal of plant physiology 170 (13), 1212-1215, 2013
10. Glucosinolate degradation products, isothiocyanates, nitriles, and thiocyanates, induce stomatal closure accompanied by peroxidase-mediated reactive oxygen species production in Arabidopsis thaliana
Mohammad Anowar Hossain, Wenxiu Ye, Mohammad Arif Hossain, Eiji Okuma, Misugi Uraji, Yoshimasa Nakamura, Izumi C. Mori, Yoshiyuki Murata. Bioscience, biotechnology, and biochemistry 77 (5), 977-983, 2013
9. Two guard cell‐preferential MAPKs, MPK9 and MPK12, regulate YEL signalling in Arabidopsis guard cells
MA Salam, F Jammes, MA Hossain, W Ye, Y Nakamura, IC Mori, JM Kwak, ... Plant Biology 15 (3), 436-442 38 2013
8. Effects of Depletion of Glutathione on Abscisic Acid- and Methyl Jasmonate-Induced Stomatal Closure in Arabidopsis thaliana
Nusrat Akter, Sobahan Ma, Misugi Uraji, Wenxiu Ye, Mohammad Arif Hossain, Izumi C. Mori, Yoshimasa Nakamura, Yoshiyuki Murata. Bioscience, biotechnology, and biochemistry 76 (11), 2032-2037, 2012
7. MAP kinases, MPK9 and MPK12, regulate chitosan-induced stomatal closure
Mohammad Arif Salam, Fabrice Jammes, Mohammad Arif Hossain, Wenxiu Ye, Yoshimasa Nakamura, Izumi C. Mori, Jin-Myung Kwak, Yoshiyuki Murata. Bioscience, biotechnology, and biochemistry 76 (9), 1785-1787, 2012
6. Physicochemical properties and radical scavenging capacities of pepsin-solubilized collagen from sea cucumber Stichopus japonicus
Beiwei Zhu, Xiaoping Dong, Dayong Zhou, Ying Gao, Jingfeng Yang, Dongmei Li, Xiaokang Zhao, Tiantian Ren, Wenxiu Ye, Hui Tan, Haitao Wu, Changxing Yu. Food Hydrocolloids 28 (1), 182-188, 2012
5. Methylglyoxal-induced stomatal closure accompanied by peroxidase-mediated ROS production in Arabidopsis
Tania Salam, Mohammad Anowar Hossain, Wenxiu Ye, Yoshimasa Nakamura, Izumi C. Mori, Yoshiyuki Murata. Journal of plant physiology 169 (10), 979-986, 2012
4. Cooperative function of PLDδ and PLDα1 in abscisic acid-induced stomatal closure in Arabidopsis
Misugi Uraji, Takeshi Katagiri, Eiji Okuma, Wenxiu Ye, Mohammad Anowar Hossain, Choji Masuda, Aya Miura, Yoshimasa Nakamura, Izumi C. Mori, Kazuo Shinozaki, Yoshiyuki Murata. Plant physiology 159 (1), 450-460, 2012
3. Isolation and characterization of pepsin-soluble collagen from abalone (Haliotis discus hannai) gastropod muscle part II
Xiuping Dong, Qixin Yuan, Hang Qi, Jingfeng Yang, Beiwei Zhu, Dayong Zhou, Yoshiyuki Murata, Wenxiu Ye. Food science and technology research 18 (2), 271-278, 2012
2. Purification and characterization of cathepsin B from the gut of the sea cucumber (Stichopus japonicas)
Liming Sun, Beiwei Zhu, Haitao Wu, Lei Yu, Dayong Zhou, Xiuping Dong, Jing feng Yang, Dongmei Li, Wenxiu Ye, Yoshiyuki Murata. Food science and biotechnology 20, 919-925, 2011
1. Structural analysis and CCK-releasing activity of a sulphated polysaccharide from abalone (Haliotis Discus Hannai Ino) viscera1
B Zhu, D Li, D Zhou, S Han, J Yang, T Li, W Ye, GH Greeley Food Chemistry 125 (4), 1273-1278, 2011
